For three nights our pup TT cried in her crate at night. On the fourth night my husband put his dressing gown on the top of the crate, so she had his smell (and the tie up to chew), we didnt have a peep out of her in the nights afterwards, after about a week we removed the dressing gown (he was getting abit cold by then!). She was absolutely fine after this.
Try giving her something with your smell on to cuddle !!!!!